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Application Components

The Zynomi platform brings together web applications, mobile engagement, analytics, and AI-powered insights into a unified clinical trial ecosystem.

Platform Overview


User-Facing Applications

Zynomi CTMS

Clinical Trial Management System — The central hub for designing, executing, and monitoring clinical trials.

CapabilityDescription
Study DesignProtocol configuration, eligibility criteria, visit schedules
eCRF BuilderDrag-and-drop form designer with CDISC-compliant fields
Site ManagementMulti-site setup with investigators and coordinators
Subject EnrollmentPatient registration, consent tracking, assignment
Data CaptureReal-time eCRF completion, adverse event reporting
Trial ExecutionVisit tracking, progress monitoring, compliance dashboards
Master DataCentralized configuration for sites, users, and forms

CTMS Dashboard

Subject Link — The patient-facing mobile companion app functioning as an ePRO (Electronic Patient-Reported Outcomes) solution.

CapabilityDescription
Medication RemindersPush notifications for dose schedules
Health TrackingVitals, symptoms, and activity logging
ePRO CollectionPatient-reported outcomes via guided forms
Concomitant MedicationsSubjects add/modify non-trial medications
Visit NotificationsAppointment reminders and check-ins
Study PortalView active and historical trial participation

Sublink Mobile App

Study Coordinator Integration

Study Coordinators monitor adherence and medication progress from the CTMS web app in real-time.


Analytics and Visualizations

Embedded dashboards within both CTMS and Sublink apps provide real-time insights.

Metric CategoryExamples
EnrollmentMetrics, trends, targets
ComplianceVisit adherence, form completion
Subject StatusActive, completed, withdrawn
SafetyAdverse event summaries
Site PerformanceEnrollment rates, data quality

Analytics Dashboard

AI Assistant

An embedded chat interface within CTMS enabling natural language conversations with clinical data.

FeatureDescription
MCP ArchitectureTool-calling for structured queries
Semantic LayerGoverned metrics as data source
Grounded ResponsesNo hallucinations, real data only
Multi-Step QueriesComplex analytical conversations

AI Assistant


CDISC Reports

Generate regulatory-compliant exports directly from captured study data.

FeatureDescription
ODM.xml ExportCDISC-compliant data format
Study DefinitionsProtocol and form metadata
Clinical DataSubject records and observations
Access ControlAvailable to Coordinators, PIs, and Admins

Platform Infrastructure

The following components power the analytics and AI capabilities of the platform.

Data Ingestor

Daily OLTP-to-lakehouse pipeline populating Bronze layer tables from transactional systems.

Data Transformation

dbt-powered pipelines building the Data Lakehouse:

  • Bronze, Silver, Gold layers
  • Domain-specific Data Marts
  • Incremental transformations

Semantic Layer

Governed metrics layer powered by Cube.dev:

  • Consistent metric definitions
  • dbt-to-Cube integration
  • REST and GraphQL APIs

MCP Server

Semantic Layer exposed as Model Context Protocol tools:

  • AI agents query via MCP
  • Secure, governed access
  • Tool-calling compatible

MCP-REST Bridge

Configurable LLM gateway:

  • Default: GPT-4.0 Mini
  • Any LLM provider supported
  • REST API interface

AI Agent

Conversational interface:

  • Natural language queries
  • Advanced formatting
  • Multi-turn conversations

Architecture Overview

Architecture Diagram


Component Summary

ComponentTypePurpose
Zynomi CTMSWeb ApplicationStudy design, execution, monitoring
SublinkMobile ApplicationSubject engagement, ePRO, reminders
AnalyticsEmbeddedReal-time dashboards and visualizations
AI AssistantEmbeddedNatural language analytics
Semantic LayerInfrastructureGoverned metrics via Cube.dev
MCP ServerInfrastructureAI tool-calling interface
dbt PipelineInfrastructureData transformation and marts